TranscriptomeR

Expressions

Statistics

Sample annotation

Expressions

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Gene ID column:

First column containing expressions:

Last column containing expressions:

This table should have genes in rows and normalized expressions in columns. Can also include statistics as in Deseq2.

Statistics

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Gene ID column:

Column containing p-values:

Column containing fold change:

Proceed without foldchange and p-value data

Statistics (here foldchange and pvalue) can be a part of the table with expressions, as is in DESeq2

Sample annotation

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Subject ID column:

Column containing groupping:

Keep these groups:

This table should have samples in rows and sample annotations in columns including a column with differential expression groups
Some parts of this tool work without this table

Point size:

Expression axis type:

SD x-axis type:

Cutoffs:

Exact values

Top:

Find genes by

Table

Y axis range:

Number of columns

Plot width in px

Plot height in px

Plot header

Group samples by:

Show:

Show only selected plots

Species

Enrichment Kind

Annotation Source

Term:Gene(:Name) Mapping

Browse...

ontology

Plot type

Select set by name

Gene Set numbers

Show Ranks

Number of pathways

Documentation

Running GSEA....

GSEA Failed.

For custom GSEA, please provide a '.csv' file.

Interactivity not supported for ridges

No term enriched...

Centre

Scale

Plot type

Gene labels

Number of rows

Components

Include

Color by

Select

Color

No. Colors

low

Mid

High

Group

Ellipse

Components

Show top n

Combined

Method

Labels

Cut off Variable

Value >=

Documentation

Running Horn's analysis....

Perplexity

+PCA

Center

Scale

Color

Group

Color

Documentation

Neighbors

Color

Group

Color

Documentation

Distance

Linkage

Scale?

Cluster?

rows

columns

Labels Column

Tree Height (Col)

Tree Height (Row)

Color Type

No. Colors

Palette

Specific Palette

low

Mid

High

Annotation Column

Annotation Colors

Expressions

Statistics

Sample annotation

Expressions

This table should have genes in rows and normalized expressions in columns. Can also include statistics as in Deseq2.

Statistics

Statistics (here foldchange and pvalue) can be a part of the table with expressions, as is in DESeq2

Sample annotation

This table should have samples in rows and sample annotations in columns including a column with differential expression groups Some parts of this tool work without this table

Cutoffs:

Top:

Find genes by

Documentation

Documentation

Documentation

Documentation

This table should have samples in rows and sample annotations in columns including a column with differential expression groups
Some parts of this tool work without this table